Well, to put it short, since Y'ffre is the most powerful Ehlnofey, I think that the laws of nature that he established work all over Nirn, while his presence may be the most prominent in the Southern regions, in Skyrim, Cyrodiil, etc. it's still the same Y'ffre nature. Kynareth/Kyne, on the other hand, is not exactly about laws of nature, more about weather. She influences the weather which in turn influences the environment and that is more prominent in the Northern region, that's why Men worship Kynareth.
Well, to put it short, since Y'ffre is the most powerful Ehlnofey, I think that the laws of nature that he established work all over Nirn, while his presence may be the most prominent in the Southern regions, in Skyrim, Cyrodiil, etc. it's still the same Y'ffre nature. Kynareth/Kyne, on the other hand, is not exactly about laws of nature, more about weather. She influences the weather which in turn influences the environment and that is more prominent in the Northern region, that's why Men worship Kynareth.